September 2006
August 2006
May 2006
April 2006
ToBiX
Tools for bioinformatics - liveCD
March 2006
BioSVG
BioSVG is a Perl framework to generate Scalable Vector Graphics (SVG) data for biological objects. It is based on Pastel, Perl2D graphics library in Perl.
Simloc
detection of local similarities
Naccess
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file.
GRAMM
GRAMM is a program for protein docking.
DomainFinder
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins.
TreeView X
A phylogenetic tree viewer
T-coffee
A multiple DNA or protein sequence alignment package.
SeaView
Multiple DNA/protein sequence alignment editor.
PovChem
Simple yet powerful tool to generate POV from a PDB file
PAML
Phylogenetic Analysis by Maximum Likelihood (PAML)
NAB
A language for macromolecules.
Jalview
A viewer and editor for multiple sequence alignments.
GRAPPA
Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
ARIADNE
Programs to compare protein sequences and profiles
fastDNAml
Program derived from Joseph Felsenstein's version 3.3 DNAML
