May 2006
April 2006
ToBiX
Tools for bioinformatics - liveCD
March 2006
Molecular Linux
Molecular Biology related programs for Linux
Simloc
detection of local similarities
Naccess
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file.
GRAMM
GRAMM is a program for protein docking.
DomainFinder
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins.
xmolwt
Calculate formula weight and percent of each element for a given formula.
TreeView X
A phylogenetic tree viewer
TINKER Molecular Modeling Package
A general purpose molecular modelling package
T-coffee
A multiple DNA or protein sequence alignment package.
SeaView
Multiple DNA/protein sequence alignment editor.
PovChem
Simple yet powerful tool to generate POV from a PDB file
platon
Tool for viewing molecular/crystallographic structures.
PAML
Phylogenetic Analysis by Maximum Likelihood (PAML)
NAB
A language for macromolecules.
Jalview
A viewer and editor for multiple sequence alignments.
GRAPPA
Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
