14 March 2006 17:00
Naccess
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file.
GRAMM
GRAMM is a program for protein docking.
Xebece
Xebece is a multipurpose tool for information visualization and organization.
the prefuse visualization toolkit
by 5 othersA Java-based toolkit for building interactive information visualization applications.
14 March 2006 16:00
DomainFinder
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins.
13 March 2006 17:00
xmolwt
Calculate formula weight and percent of each element for a given formula.
13 March 2006 16:00
TreeView X
A phylogenetic tree viewer
TINKER Molecular Modeling Package
A general purpose molecular modelling package
T-coffee
A multiple DNA or protein sequence alignment package.
SeaView
Multiple DNA/protein sequence alignment editor.
PovChem
Simple yet powerful tool to generate POV from a PDB file
platon
Tool for viewing molecular/crystallographic structures.
PAML
Phylogenetic Analysis by Maximum Likelihood (PAML)
NAB
A language for macromolecules.
Jalview
A viewer and editor for multiple sequence alignments.
GRAPPA
Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
Chemeq : a chemical equation parser
Outputs LaTeX code for chemical reaction
ARIADNE
Programs to compare protein sequences and profiles
Chemtool
Program for drawing organic molecules.
fastDNAml
Program derived from Joseph Felsenstein's version 3.3 DNAML
FTP du TIGR
FTP du TIGR
GP and Arka HomePage
Manipulate DNA/RNA sequence in a Unix fashion.
Graphic interface for the programs from the GP package
HMMER
HMMER: profile HMMs for protein sequence analysis
