public marks

PUBLIC MARKS with tag bioinformatics

18 April 2006

ToBiX

by alcane
Tools for bioinformatics - liveCD

29 March 2006

BioSVG

by alcane
BioSVG is a Perl framework to generate Scalable Vector Graphics (SVG) data for biological objects. It is based on Pastel, Perl2D graphics library in Perl.

Molecular Linux

by alcane
Molecular Biology related programs for Linux

14 March 2006

Simloc

by alcane
detection of local similarities

Naccess

by alcane
Naccess is a stand alone program that calculates the accessible area of a molecule from a PDB (Protein Data Bank) format file.

GRAMM

by alcane
GRAMM is a program for protein docking.

DomainFinder

by alcane
DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins.

13 March 2006

T-coffee

by alcane
A multiple DNA or protein sequence alignment package.

SeaView

by alcane
Multiple DNA/protein sequence alignment editor.

PovChem

by alcane
Simple yet powerful tool to generate POV from a PDB file

PAML

by alcane
Phylogenetic Analysis by Maximum Likelihood (PAML)

NAB

by alcane
A language for macromolecules.

Jalview

by alcane
A viewer and editor for multiple sequence alignments.

GRAPPA

by alcane
Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms

ARIADNE

by alcane
Programs to compare protein sequences and profiles

fastDNAml

by alcane
Program derived from Joseph Felsenstein's version 3.3 DNAML

GP and Arka HomePage

by alcane
Manipulate DNA/RNA sequence in a Unix fashion. Graphic interface for the programs from the GP package

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